PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676760522
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 251aa    MW: 28170.9 Da    PI: 4.6306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676760522genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-1888137355
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+GVr ++ +g+++AeIrd    + k  r++lg+f+taeeAa a+++a+ +l+g
  676760522  88 YRGVRKRP-WGKYAAEIRDsT--R-KGIRVWLGTFDTAEEAALAYDQAAFALKG 137
                9*******.**********32..2.24***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.98587145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3087146IPR001471AP2/ERF domain
PfamPF008472.7E-1387137IPR001471AP2/ERF domain
SMARTSM003801.9E-3787151IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2288147IPR016177DNA-binding domain
CDDcd000183.38E-2988146No hitNo description
PRINTSPR003674.0E-118899IPR001471AP2/ERF domain
PRINTSPR003674.0E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009753Biological Processresponse to jasmonic acid
GO:0009861Biological Processjasmonic acid and ethylene-dependent systemic resistance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEFQTSFFYE NQSEEFSPAN SSTTSWSSQE SFLWEDNFLH QSFDQSFLSF SPSYCSNDFF  60
TFESSIIKEE EEEATVAAEQ EEEDERSYRG VRKRPWGKYA AEIRDSTRKG IRVWLGTFDT  120
AEEAALAYDQ AAFALKGDLA VLNFPVEVVT ESLRNMKNVI LNDGESPVIA LKRKHSMRNR  180
PRGKKKSSPS SSSLTSTSSS PSSSYSSSSS SSLSSRSRKQ SAITKQESNT AVVVLEDLGA  240
EYLEELMRAC S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-2686148163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00023PBMTransfer from AT1G06160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603390.11e-113PREDICTED: ethylene-responsive transcription factor ERF094-like
SwissprotQ9LND16e-91ERF94_ARATH; Ethylene-responsive transcription factor ERF094
TrEMBLA0A078FAD61e-113A0A078FAD6_BRANA; BnaC08g44670D protein
STRINGBra032433.1-P1e-111(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06160.12e-80octadecanoid-responsive Arabidopsis AP2/ERF 59